Increasing the throughput of sensitive proteomics by plexDIA | Nature Biotechnology
Data-independent acquisition method for ubiquitinome analysis reveals regulation of circadian biology | Nature Communications
Multiplexed peptide analysis using data-independent acquisition and Skyline | Nature Protocols
Group-DIA: analyzing multiple data-independent acquisition mass spectrometry data files | Nature Methods
IceR improves proteome coverage and data completeness in global and single-cell proteomics | Nature Communications
Deep learning boosts sensitivity of mass spectrometry-based immunopeptidomics | Nature Communications
Generating high quality libraries for DIA MS with empirically corrected peptide predictions | Nature Communications
Rapid, deep and precise profiling of the plasma proteome with multi-nanoparticle protein corona | Nature Communications
MaxDIA enables library-based and library-free data-independent acquisition proteomics | Nature Biotechnology
Deep Proteomics Using Two Dimensional Data Independent Acquisition Mass Spectrometry | Analytical Chemistry
Mass-spectrometric exploration of proteome structure and function | Nature
New Nature Communications publication by Mann & Theis Groups harnesses the benefits of large-scale peptide
DIALib-QC an assessment tool for spectral libraries in data-independent acquisition proteomics | Nature Communications
Quantifying Plant Dynamic Proteomes by SWATH-based Mass Spectrometry: Trends in Plant Science
DIA-NN: neural networks and interference correction enable deep proteome coverage in high throughput | Nature Methods
Prosit: proteome-wide prediction of peptide tandem mass spectra by deep learning | Nature Methods
A streamlined platform for analyzing tera-scale DDA and DIA mass spectrometry data enables highly sensitive immunopeptidomics | Nature Communications
Chromatogram libraries improve peptide detection and quantification by data independent acquisition mass spectrometry | Nature Communications
Deep representation features from DreamDIAXMBD improve the analysis of data-independent acquisition proteomics | Communications Biology
A comprehensive LFQ benchmark dataset on modern day acquisition strategies in proteomics | Scientific Data
Frontiers | Recent Developments in Data Independent Acquisition (DIA) Mass Spectrometry: Application of Quantitative Analysis of the Brain Proteome
